CRISPR genome editors often cut DNA at unintended sites. Researchers used an evolution system called PACE to breed more precise versions, running two parallel selections: one rewarding proteins that hit the right target, another killing off variants that bind anywhere else.
Chapters
—programmable changes in genomes. One of the main challenges facing the use of genome editing proteins is that they have some off-target activity if you just take them from nature, meaning that they will hit your target, but they'll also hit other targets that aren't your target. And generally, it's not a wise idea, either for research or therapeutic purposes, to modify semi-randomly in the genome. So we used the PACE system to evolve genome editing proteins that were much more specific for maintaining their on-target activity, but getting rid of their off-target activity than the natural ones. And we did this by using positive selection pace to constantly enforce a Darwinian selection pressure that they had to bind to the target DNA sequence, and using negative selection pace, something I didn't have a chance to talk to, to get rid of their ability to bind to the off-targets. So P3 is this essential protein that the phage need to replicate. There's a sort of dark parallel universe, Bizarro World cousin called P3 neg that poisons P3.