90% of U.S. Babies Are Missing Key Gut Bacteria - Why It Matters with Stephanie Culler, PhD

14 Apr 2026 · 38 min
The Perfect Stool Understanding and Healing the Gut Microbiome

14 Apr 2026 · 38 min

0:00

In this episode of The Perfect Stool, host Lindsey Parsons interviews Dr. Stephanie Culler, co‑founder and CEO of Persephone Biosciences, about her research on the infant gut microbiome. Culler describes the My Baby Biome study, the largest U.S. survey of infant gut microbes, which found that over 90 % of babies lack core Bifidobacterium species (B. infantis, B. longum, B. breve). The absence of these keystone bacteria is linked to overgrowth of opportunistic pathogens such as Clostridium perfringens, C. difficile, pathogenic E. coli, Klebsiella, and Fusobacterium nucleatum, and is associated with higher risk of eczema, food allergies, asthma, and possibly neuro‑developmental disorders like autism. She explains how birth mode, early‑life antibiotics, modern lifestyle, and reduced environmental exposure contribute to this dysbiosis, and why human milk oligosaccharides (HMOs) are essential pre‑biotics that feed Bifidobacteria. Culler details the development of Persephone’s probiotic‑HMO product: isolation of infant‑derived strains, a microbiome‑on‑a‑chip screening platform, and a dry‑powder formulation that has completed early clinical trials showing benefits for gut development, colic, diaper rash, and immune health. The conversation expands to the relevance of early microbiome disruption for adult diseases, including colorectal cancer (Fusobacterium, colibactin‑producing E. coli, Klebsiella) and cancer immunotherapy response, as well as emerging work on autism biomarkers. Practical advice is offered for parents of C‑section or antibiotic‑exposed infants, including supplementation with the specific Bifidobacterium strains and HMOs, considerations for FUT2 non‑secretor mothers, and the safety of the product even in infants with a relatively healthy microbiome. Culler also discusses the longer‑term vision of microbiome therapeutics, noting that broader adult‑focused products may take 10‑15 years to mature. Promotional segments for the host’s supplements and coaching services are interspersed throughout the episode, and a discount code (PERFECTSTOOL30) is provided for listeners to purchase the Persephone product.

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